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ZIH HPC Compendium
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Quick Start
Application for Login and Resources
Application for Login and Resources
Overview
Terms of Use
Request for Resources
Project Request Form Jards
Project Management
Acknowledgement
Access to ZIH Systems
Access to ZIH Systems
Overview
Connecting with SSH
Connecting with SSH
Connecting via Terminal (Linux, Mac, Windows)
Connecting with MobaXterm (Windows)
Connecting with PuTTY (Windows)
Desktop Cloud Visualization (DCV)
Graphical Applications with WebVNC
JupyterHub
JupyterHub
JupyterHub
Custom Environments for JupyterHub
JupyterHub for Teaching
JupyterHub Teaching Example
JupyterLab
Custom JupyterLab
Key Fingerprints
Security Restrictions
Data Transfer
Data Transfer
Overview
Transfer Data Inside ZIH Systems with Datamover
Transfer Data to/from ZIH Systems via Dataport Nodes
Transfer Data to/from old ZIH Systems via Export Nodes
Transfer Data between ZIH Systems and Object Storage (S3)
Data Life Cycle Management
Data Life Cycle Management
Overview
Filesystems
Filesystems
Overview
Permanent Filesystems
Working Filesystems
Lustre
BeeGFS
Warm Archive
Intermediate Archive
Workspaces
Long-Term Preservation of Research Data
Sharing Data
User Environment
User Environment
Overview
Environment Modules
Private Modules
Software Installation with EasyBuild
Python Virtual Environments
ZSH as Alternative Shell
Applications and Software
Applications and Software
Containers
Containers
Singularity
Singularity Recipes and Hints
Singularity for Power9 Architecture
Virtual Machines
GPU-accelerated Containers for Deep Learning (NGC Containers)
CI/CD on HPC
External Licenses
Computational Fluid Dynamics (CFD)
Mathematics Applications
Nanoscale Simulations
FEM Software
Visualization
Data Analytics
Data Analytics
Overview
Data Analytics with R
Data Analytics with RStudio
Data Analytics with Python
Big Data Analytics
Machine Learning
Machine Learning
Overview
Neural Networks with TensorFlow
Inspect Model Training with TensorBoard
Neural Networks with PyTorch
Distributed Training
Hyperparameter Optimization (OmniOpt)
Machine Learning with PowerAI
Virtual Desktops
Software Development and Tools
Software Development and Tools
Overview
Building Software
Building Software
Overview
Compilers and Flags
GPU Programming
Mathematics Libraries
Known Issues with MPI
Debugging
Performance Engineering Tools
Performance Engineering Tools
Overview
Record Course of Events with lo2s
Check MPI Correctness with MUST
Read CPU Performance Counters with PAPI
Produce Performance Overview with Perf
Track Slurm Jobs with PIKA
Record Course of Events with Score-P
Study Course of Events with Vampir
Measure Energy Consumption
Compare System Performance with SPEChpc
Utilities
HPC Resources and Jobs
HPC Resources and Jobs
Overview
HPC Resources
HPC Resources
Overview
CPU Cluster Barnard
GPU Cluster Alpha Centauri
SMP Cluster Julia
CPU Cluster Romeo
GPU Cluster Power9
NVIDIA Arm HPC Developer Kit
NVMe Storage
Running Jobs
Running Jobs
Batch System Slurm
Job Examples
Slurm Resource Limits
Slurm Job File Generator
Checkpoint/Restart
Binding and Distribution of Tasks
User Support
Archive
Archive
Overview
Bio Informatics
CXFS End of Support
Load Leveler
Jobs without InfiniBand
Migration towards Phase 2
Platform LSF
Jupyter Installation
Profile Jobs with Slurm
Switched-Off Systems
Switched-Off Systems
Overview
System Taurus
Migration From Deimos to Atlas
System Altix
System Atlas
System Deimos
System Phobos
System Titan
System Triton
System Venus
KNL Nodes
SCS5 Migration Hints
UNICORE Rest API
VampirTrace
Windows Batchjobs
Contribute to Documentation
Contribute to Documentation
How-To Contribute
Content Rules
Contribute via Browser
Contribute via Local Clone
HPC Support
Operation Status
hpc-support@tu-dresden.de
GPU Cluster Power9
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